Hi Marze, headstock and neck re-shaping look good.
As for the high frets you should be able to re-seat them with a fret hammer or if you haven't got one a rubber mallet should work ok.

Make sure you support the neck underneath when you hammer them in.

I wouldn't put DT clear on the fingerboard, I'd put Dingowax or some sort of suitable neck oil.
You can always sand it to get a nice smooth feel