...or maybe too early applying and covering with tape when the poly has not finished venting the solvents....
This would be my guess. I never apply tape to any finish that hasn't at least gassed off to the point that it would be ready for final wet sand an polish.

I presently have a maple neck/fretboard that has undergone a re-radius and awaiting a re-fret. It will be getting a spray with satin poly after I have installed the frets. I won't do a level & crown for at least 2 weeks after the poly goes on.
However I will do the fret ends before spaying the poly, but I can safely do that without masking by using a proper fret end file.

Never had any issues with masking poly doing it this way.