Hi Ozzie, I like your well thought out planning checklist for this kit.
Just a few thoughts and comments I felt worth sharing:
1. Not sure timbermate grain filling will do much on basswood or back of a maple neck but happy to be proven wrong.
7. Stock Humbuckers are not bad and have plenty of grunt with 7.97k on one coil and 8.01k across the other coil which means once split they still have enough oomph. You can spend plenty on soap bar upgrades for not much extra benefit. I used Bensons in the EX-5 and they have plenty of MM warmth and alternatives were either Bartolini or EMG passives. If budget is an issue suggest trying stock units to begin with as that will save at least $200 - $250 up-front.
8. I used one of these on my EX-5 and it is a ripper, fantastic idea.... Aussies seller doesn't have any available but this UK site does and price seems reasonable https://www.thomann.de/gb/warwick_ju...ring_45_mm.htm
* 3 way switch - stock units are noisy and prone to failure. I have used these on most of my 3 position switch upgrades and found them easy to connect and relatively noiseless when switching across all 3 settings ...... https://www.realparts.com.au/electro...ch-chrome.html
Stock tuners on this kit are better than the open back elephant ears, in fact they look the same as on the EX-5. They are functional, don't slip but do feel a bit tight under tension. OK enough for occasional use but if regular gigging was happening that would justify upgrades.
Timber bridge? No idea buddy and tend to think once it has been 'located' in the right scale length position maybe glue it down? Best to wait for others to drop by and add their thoughts.
Cheers, Waz