The first thing to do is to go into a guitar shop and look equally closely at their stock...
Too true. There are a heap of little things (imperfections) on factory produced guitars that would likely go unnoticed until we start building our own and tend to become microscopically critical with our work.

After I started spraying my finishes with a gun, I became super critical of my results because I couldn't (still can't) lay down a clearcoat perfectly flat (ie: zero orange peel).
Suddenly my eyes became near obsessively focused on paint jobs on cars in carparks. It was then I started to see brand new automobiles that had noticeable orange peel. Not horrible mind you, but it was there, and I began to feel less crappy about the quality of my own work. I guess taking comfort in knowing it's not just me, and maybe I don't totally suck after all . (still working on that last part btw)

I don't recall seeing this issue on my PRS-1TS kit, but looking at it, I'd think some careful scraping or sanding would clean it up. I do know I sanded the join between the veneer and binding well before I applied alcohol based dye, but I'm sure it was just me being thorough, not trying to fix anything. FWIW, my top coat is Tru Oil.

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