OK, bought a drill guide for about $30 on Ebay. Its ok I suppose for the $30, the reach of the arm is not long enough to drill the string through unless I pivot the base around and clamp it on the the body. Which is fine but I'm still going through beta testing on a thick scrap bit of wood.
My current plan is to attach the Wilkinson bridge, align the top E hole, punch it, clamp the press (when aligned), test then drill. repeat the same process for the bottom e hole, then for each string through.
Like I said thats the rough plan for my scrap bit of wood, I guess if I come up with any difficulties it will show up. If anyone has a better suggestion/tactic, please let me know.