Attached is the wiring diagram I was following. The neck pickup has a white and black wire. Currently the black wire is attached to the three way switch and the white wire to the volume pot.
The bridge pickup has a black and red wire, the black wire is to the three way switch and the red wire to the volume pot.
I originally had the wires going the other way with both black wires to the volume pot but then I changed them because I wasn't getting any sound.