I'm not 100% sure what the problem was, but I ended up trying to clean up the solder points and wires on the neck volume pot, and whether the connection wasn't great until I did that, and that's why it stopped working. Also, I think the output jack was also getting grounded out in the cavity, a small amount of the electrical tape I covered the shielding with, had gotten peeled up, so I covered that up as well. It may have been grounding out another place as well because I tried to make the wires more organized for when I put the pickguard on the body. So, between those things I did, it seemed to fix the problem, and I am now very close to finishing my guitar, need to add the string trees and do a setup