I don't have a layout drawn up that matches your particular configuration, but the way the tone push/pull is wired in the diagram below is how you do it. Basically, you can be in any position on the 3-way and immediately switch to both pups in series (it essentially bypasses the lever switch), and switch back just with the push/pull. This is from a Premier Guitar article (with a nice diagram):
If you wire your coil split like the SD diagram, your bridge phase swap like your last sub-diagram and then wire the bridge and neck pups' connections to the 3-way and series/parallel push/pull like above, then it should all work.
If you're not sure let me know and I'll rough out a complete diagram for you.