Originally Posted by
McCreed
As sonic said, it probably won't be as noticeable when finished and tuners installed.
Try fitting the tuners and see if there's enough wiggle room in the holes to position them more evenly.
I'm presuming you're using the included kit tuners, so whilst it may not be the perfect fix, rather than dowelling and re-drilling, you could cheat the bottom row of holes over toward the centre 1mm with a round file. The dress washers will be large enough to cover the holes and the threaded bush should have enough clamping pressure to keep them secure as well as the fixing screws on the back.
As I said there may be just enough room with the existing holes to get them centred without modifying them. Give that a try first.